Dakar, Senegal · UN-CHK

We integrate community knowledge with molecular science to document
what Africa knows.

The Sall Lab works with traditional practitioner communities, from field to laboratory, to document and understand African medicinal biodiversity using omics approaches and data analysis.
Molecular Biology
Omics Sciences
Bioinformatics
Traditional Knowledge

Research

Research areas

Genomic authentication and medicinal biodiversity. Medicinal plants of West Africa represent a therapeutic heritage that remains largely undocumented at the molecular level. We develop omics approaches (genomics, transcriptomics, metabolomics) to authenticate, characterise and map the genetic diversity of Senegalese medicinal species. The goal is to build a reference data infrastructure that does not yet exist for West African flora.

Traditional knowledge and data sovereignty. The knowledge that practitioner communities hold about their plants precedes and complements molecular characterisation. We work to integrate this knowledge into omics pipelines: documenting it with the communities concerned, connecting it to genomic data, and developing governance frameworks to protect it.

Bioinformatics infrastructure and training. Omics data production in Africa cannot durably depend on analytical capacity located elsewhere. We are building an integrated pipeline (field, wet laboratory, high-performance computing) through which students of the Licence and Master programme in Molecular Genetics and Bioinformatics at the Université Numérique Cheikh Hamidou Kane (UN-CHK) are trained through practice, contributing directly to the scientific output of the laboratory.

Infrastructure

  • High-performance computing · Kàkkatar v1 Infrastructure under deployment in Dakar · Operational target 2026
  • Field network Access to practitioner communities and collection sites in Senegal and West Africa
  • Wet laboratory Benches installed · Equipment in progress

Team

Principal
Investigator.

Dr. Khadidiatou Sall · PI

Dr. Khadidiatou Sall

Principal Investigator · Molecular Biologist and Bioinformatician

Research interests

Omics Sciences
Bioinformatics
African Biodiversity
Seed Biology
Traditional Knowledge
Data Sovereignty
Knowledge Governance

Lab members

Ousseynou Ben Diouf

Bioinformatician

Alassane Salam Diop

Laboratory Technician

Open opportunities depending on projects and collaborations: master's students, doctoral candidates, postdocs and research associates. Contact Dr. Sall directly.

Collaborators

Prof. Ousmane Sall

UN-CHK · Semantic Computing (semantic web, artificial intelligence)

Prof. El Hadji Mamadou Nguer

UN-CHK · Computer Science

Dr. Mama Racky Ndiaye

USSEIN · Population Genetics

Dr. Absa Gassama

UN-CHK · Sociology · Traditional Practitioner Networks

Training

MGBIO —training through research and action.

Students are directly involved in Sall Lab research activities and trained in science communication through SeeSD, two complementary dimensions of a practice-based programme.

Programme

Molecular Genetics & Bioinformatics (MGBIO)

The MGBIO programme at UN-CHK was launched in 2016 as a MESRI initiative to position Senegal in emerging sciences. After a first phase interrupted in 2019, the programme was taken over by UN-CHK. Since 2021, Dr. Sall, as programme director, has led its development: curriculum design, faculty recruitment, student supervision and progressive integration of research activities.

 

172

Students enrolled

65%

Women

5

Cohorts

2 776

Applications 2024

Community Engagement

Citizen Science · SeeSD

Students in the programme are trained in science communication and deployed by SeeSD for STEAM (science, technology, engineering, arts and mathematics) outreach with communities, in local languages. Science and community knowledge feed into each other.

6 000+

People impacted since 2015

70+

Active mediators

3

Regions covered

7M+

Views in 2025

Collaboration

Collaborate with
the Sall Lab.

The Sall Lab brings field, laboratory and analytical capacity rooted in local context. We document knowledge with communities, collect plant material, generate data and analyse it on site. We are looking for scientific partners who share this vision, across Africa and internationally.

We are open to

Research collaborations
PhD co-supervision
Researcher mobility
International research consortia
International co-submissions
01
Access to the field and communities
Medicinal biodiversity, collection sites, documented knowledge in Senegal and West Africa.
02
Integrated capacity
From community collection to sequencing — a complete field → laboratory → analysis chain.
03
Analytical infrastructure
High-performance computing currently being deployed in Dakar, operational goal 2026.
04
Training and mobility
Master’s students and researchers available for co-supervision and collaborative projects.

Publications

Selected
works.

2025
Strengthening Genomic Sovereignty in Africa: The African Bioinformatics Center for Omics (ABCOMICS) Project
Gueye K., Mane K., Mboup P.A., Diop M.F., Shehu M., Ahadzie B., Diame M.L., Dieng I., Diop O., Faye A., Kotanmi B., Mboup M.N., Mboowa G., Nuredin M., Ndour P.A., Ndiaye A., Cisse B., Diamanka A., Diop G., Gueye M., Sall K., Sarr I., Thiare O. and Mboup S.
Journal of Biosciences and Bioengineering, 13(1)
2019
DELAY OF GERMINATION 1-LIKE 4 acts as an inducer of seed reserve accumulation
Sall K., Dekkers B.J.W., Nonogaki M., Katsuragawa Y., Koyari R., Hendrix D. and Nonogaki H.
The Plant Journal, 100(1), 7–19
2017
Transcriptomics of nine-cis-epoxycarotenoid dioxygenase 6 induction in imbibed seeds reveals feedback mechanisms and long noncoding RNAs
Sall K., Nonogaki M., Katsuragawa Y., Hendrix D. and Nonogaki H.
Seed Science Research, 27(4), 251–261
2014
Amplification of ABA biosynthesis and signaling through a positive feedback mechanism in seeds
Nonogaki M., Sall K., Nambara E. and Nonogaki H.
The Plant Journal, 78(3), 527–539
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Dr. Khadidiatou Sall · Sall Lab · UN-CHK · Dakar, Sénégal